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v0.6.0

2026-03-06 · GitHub release · Diff

Layout and routing improvements driven by adding the nf-core/variantbenchmarking pipeline to the gallery. The pipeline has a complex fan-out/fan-in topology with multiple converging routes that exposed several inter-section routing edge cases.

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nf-core/variantbenchmarking 1 Inputs 2 Preprocessing (Optional) 3 Variant Normalization (Optional) 4 Variant Filtering (Optional) 6 Ensembl Truth 7 Benchmarking 8 Output Processing 5 Variant Statistics FASTA VCF BED BED TSV CSV HTML HTML TSV TSV Subsample SVProcessing FilterContigs bcftoolsstats SURVIVORstats Truvari SVanalyzer bcftoolsfilter RTGtools bndeval Samplesheet SURVIVORmerge SURVIVORfilter wittyer Reference Genome Liftover(Picard, UCSC) VariantNormalization bcftoolsmerge RTGtools vcfeval Truth VCF hap.py Regions BED som.py Targets BED GATK4 Concordance MergeTP/FP/FN SNV stats Intersection SummaryStats SV stats BenchmarkingSummaries ConsensusFilter VCF toCSV datavzrd MergedCSVs Plots HTMLReport MultiQCReport Test Preprocessing Truth Preprocessing SV/CNV Benchmarking SNV/INDEL Benchmarking Concordance Intersection Output Processing created with nf-metro v1.1.0+dev