Skip to content

v0.5.1

2026-02-25 · GitHub release · Diff

  • Added the nf-core/variantbenchmarking example, along with the layout fixes needed to make it render cleanly
  • Updated README renders with the current codebase output
Rendered map
nf-core/variantbenchmarking 1 Inputs 2 Preprocessing (Optional) 3 Variant Normalization (Optional) 4 Variant Filtering (Optional) 6 Ensembl Truth 7 Benchmarking 8 Output Processing 5 Variant Statistics FASTA VCF BED BED TSV CSV HTML HTML TSV TSV Subsample SVProcessing FilterContigs bcftoolsstats SURVIVORstats Truvari SVanalyzer bcftoolsfilter RTGtools bndeval Samplesheet SURVIVORmerge SURVIVORfilter wittyer Reference Genome Liftover(Picard, UCSC) VariantNormalization bcftoolsmerge RTGtools vcfeval Truth VCF hap.py Regions BED som.py Targets BED GATK4 Concordance MergeTP/FP/FN SNV stats Intersection SummaryStats SV stats BenchmarkingSummaries ConsensusFilter VCF toCSV datavzrd MergedCSVs Plots HTMLReport MultiQCReport Test Preprocessing Truth Preprocessing SV/CNV Benchmarking SNV/INDEL Benchmarking Concordance Intersection Output Processing created with nf-metro v1.1.0+dev