Riboseq Fold Two Dir Entry

Gallery / Serpentine Layout

The same folded Ribo-seq excerpt pinned with explicit grid cells and the hand-tuned `entry: top` incantation. Regression fixture for #1341's route-around and overlap goals: the top-declared entry drags the right-arriving feed and the P-site box overlaps its ORF neighbour. Compare the hint-free variant, which lays out cleanly.

Mermaid source

%%metro title: Riboseq Fold Two-Direction Entry
%%metro directional: true
%%metro line: ribo | Ribo-seq | #2db572
%%metro grid: prep | 0,0
%%metro grid: align | 1,0
%%metro grid: quantification | 2,0
%%metro grid: orf_calling | 3,1
%%metro grid: psite_id | 2,1
%%metro grid: te | 1,1

graph LR
    subgraph prep [Prep]
        p0[Trim]
    end
    subgraph align [Align]
        a0[Align]
    end
    subgraph quantification [Quant]
        q0[Quantify]
    end
    subgraph orf_calling [ORF]
        %%metro exit: left | ribo
        o0[Call ORFs]
    end
    subgraph psite_id [P-site]
        %%metro entry: top | ribo
        %%metro exit: left | ribo
        ps0[P-sites]
    end
    subgraph te [TE]
        %%metro entry: right | ribo
        t0[TE]
    end
    p0 -->|ribo| a0
    a0 -->|ribo| q0
    q0 -->|ribo| o0
    q0 -->|ribo| ps0
    o0 -->|ribo| ps0
    ps0 -->|ribo| t0

CLI command

nf-metro render examples/topologies/riboseq_fold_two_dir_entry.mmd -o riboseq_fold_two_dir_entry.svg

Rendered map