Junction Entry Lane Rebase

Gallery / Merge & Convergence

A section carrying lines 2 and 4 of a four-line order sits beside one carrying line 3, so its bundle compacts onto two lanes. It takes the lane pair that keeps its feeder junction's line level across the entry port, rather than the topmost pair, which would tip that straight run into a shallow slant (issue #1816).

Mermaid source

examples/topologies/junction_entry_lane_rebase.mmd

%%metro title: Junction entry lane re-base
%%metro line: riboseq | Ribo-seq | #e6007e
%%metro line: rnaseq | Matched RNA-seq | #2db572
%%metro line: tiseq | TI-seq | #2b6cb0
%%metro line: annotation | Hybrid annotation | #f2b407

graph LR
    subgraph novel_transcripts [Transcript discovery]
        stringtie -->|rnaseq| hybrid_merge
    end
    subgraph orf_calling [ORF discovery & calling]
        star_hybrid -->|riboseq,tiseq| ribocode
        ribotricer -->|riboseq| orf_merge
    end
    subgraph reporting [Reporting]
        multiqc_final -->|rnaseq| report_final
    end
    umi_dedup -->|rnaseq| stringtie
    umi_dedup -->|riboseq| ribotricer
    anota2seq -->|rnaseq| multiqc_final
    hybrid_merge -->|annotation| ribocode

CLI command

nf-metro render examples/topologies/junction_entry_lane_rebase.mmd -o junction_entry_lane_rebase.svg

Rendered map