Funcprofiler Upstream

Gallery / Fan-out and Fan-in

A profiling section whose stacked tools share a fan-in/fan-out: a line the 'FMH FunProfiler' station does not carry would rake its wide below-station label, so the label flips to its clear side and the diagonal no longer strikes the glyphs.

Mermaid source

%%metro title: nf-core/funcprofiler (upstream)
%%metro style: dark
%%metro line: qc | Preprocessing & QC | #4CAF50
%%metro line: concat | Merge & Concat | #2196F3
%%metro line: db | Database Prep | #607D8B
%%metro line: humann3 | HUMAnN v3 | #FF9800
%%metro line: humann4 | HUMAnN v4 | #FF5722
%%metro line: fmhfunprofiler | FMH FunProfiler | #E91E63
%%metro line: rgi | RGI | #CDDC39
%%metro line: mifaser | mifaser | #00BCD4
%%metro line: diamond | DIAMOND | #9C27B0
%%metro line: eggnog | eggNOG-mapper | #3F51B5
%%metro line: multiqc | Reporting | #795548
%%metro compact_offsets: true

graph LR
    subgraph input[Input]
        input_short([Short Reads])
        input_dbs([Input Databases])
        sr_qc(Preprocess)
        merge(MERGE_RUNS)
    end

    subgraph profiling[Functional Profiling]
        humann3(HUMAnN v3)
        humann4(HUMAnN v4)
        fmhfunprofiler(FMH FunProfiler)
        RGI(RGI)
        mifaser(mifaser)
        diamond(DIAMOND)
        eggnog_mapper(eggNOG-mapper)
    end

    subgraph QC[Quality Check]
        multiqc(MultiQC)
    end

    subgraph Output[Output]
        output([Results Directory])
    end

    %% DB Prep
    input_dbs -->|db| humann3
    input_dbs -->|db| humann4
    input_dbs -->|db| fmhfunprofiler
    input_dbs -->|db| RGI
    input_dbs -->|db| mifaser
    input_dbs -->|db| diamond
    input_dbs -->|db| eggnog_mapper

    %% Preprocessing
    input_short -->|qc| sr_qc
    sr_qc -->|concat| merge

    %% Profiling split
    merge -->|humann3| humann3
    merge -->|humann4| humann4
    merge -->|fmhfunprofiler| fmhfunprofiler
    merge -->|rgi| RGI
    merge -->|mifaser| mifaser
    merge -->|diamond| diamond
    merge -->|eggnog| eggnog_mapper

    %% Reporting
    sr_qc -->|multiqc| multiqc
    humann3 -->|multiqc| multiqc
    humann4 -->|multiqc| multiqc
    fmhfunprofiler -->|multiqc| multiqc
    RGI -->|multiqc| multiqc
    mifaser -->|multiqc| multiqc
    diamond -->|multiqc| multiqc
    eggnog_mapper -->|multiqc| multiqc

    %% Output
    multiqc -->|multiqc| output
    humann3 -->|humann3| output
    humann4 -->|humann4| output
    fmhfunprofiler -->|fmhfunprofiler| output
    RGI -->|rgi| output
    mifaser -->|mifaser| output
    diamond -->|diamond| output
    eggnog_mapper -->|eggnog| output

CLI command

nf-metro render examples/topologies/funcprofiler_upstream.mmd -o funcprofiler_upstream.svg

Rendered map