Metagenomics Input

Gallery / Feature Showcase

A `%%metro direction: TB` input section whose `Short reads` FASTQ terminus is a source, so its file icon sits above the station on the vertical flow. The caption seats clear above the icon instead of striking the station marker.

Mermaid source

examples/metagenomics_input.mmd

%%metro title: Metagenomic profiling (input slice)
%%metro style: nfcore
%%metro line: prof | Functional profiling | #3f9e5c
%%metro files: input_reads | FASTQ | Short reads | banner

graph LR
    subgraph input [Input]
        %%metro direction: TB
        input_reads[ ]
        fastqc[FastQC]
        input_reads -->|prof| fastqc
    end

    subgraph profiling [Profiling]
        %%metro entry: left | prof
        host_removal[Host removal]
        profile[Profile pathways]
        host_removal -->|prof| profile
    end

    fastqc -->|prof| host_removal

CLI command

nf-metro render examples/metagenomics_input.mmd -o metagenomics_input.svg

Rendered map