Render diff - PR #1632

2 changed out of 291 total renders. Generated 2026-07-30 13:36 UTC.

What is this page?

nf-metro generates metro-map-style SVG diagrams from Mermaid graph definitions. This page is automatically generated for every pull request and shows only the renders that changed compared to the main branch.

Use it to check that code changes produce the intended visual result without unexpected side-effects on other diagrams. Each entry shows the base (main) render on the left and the PR render on the right. Use the toggle buttons to switch between side-by-side, base-only, and PR-only views.

What to look for:

Layout-quality metrics

Advisory only — nothing gates on these. green improved, red regressed. Lower is better except in the ↑ column.

RenderCrossingsNear-horiz.Lone diag.Bends/routeCornersTurn/route (rad)Label strikesMarker gap ↑Excess gapsWasted canvas
pipeline_sarek_metro0000.4340.4→0.4 (+0.0)0404.8→399.6 (−5.2)010%→9% (−0%)
sarek_metro0000.4340.4→0.4 (+0.0)0404.8→399.6 (−5.2)010%→9% (−0%)

Changed renders

nf-core Pipelines

Realistic Pipelines

nf-core Pipelines

Pipeline Sarek Metro changed

Base (main)

1 Pre-processing 2 Variant calling 3 Annotation 4 Example analysis pathways uBAM spring FASTQ BAM/ CRAM CRAM CRAM CRAM VCF VCF CRAM VCF TXT ... variant calling snpEff convert bcftools ensemblVEP DeepVariant FastQC samtools bcftools annotate FreeBayes UMI Varlociraptor MultiQC HaplotypeCaller finalise FastP Sentieon Haplotyper normalise BBsplit Sentieon DNAscope consensus mapping Sentieon TNscope convert LoFreq markduplicates mosdepth, samtools MuSE prepare recalibration mpileup applybqsr Mutect2 mosdepth, samtools Strelka2 NGSCheckmate indexcov Manta TIDDIT ASCAT Control-FREEC CNVkit MSIsensor2 MSIsensor-pro SNPs & Indels SV & CNV MSI preprocessing__exit_right_0 (right) variantcalling__exit_right_1 (right) variantcalling__entry_left_2 (left) annotation__entry_left_3 (left) col 0|1 col 1|2 row 0|1 row 0 grid row 1 grid _vc_merge __converge_out_1 Core workflow Germline Tumor only Tumor-normal pair Mandatory Parabricks accelerated Sentieon accelerated Parabricks & Sentieon accelerated Expanded in pathways panel created with nf-metro v1.1.0+dev Adapted from: Fellows Yates, James A., et al. PeerJ 9 (2021)

PR

1 Pre-processing 2 Variant calling 3 Annotation 4 Example analysis pathways uBAM spring FASTQ BAM/ CRAM CRAM CRAM CRAM VCF VCF CRAM VCF TXT ... variant calling snpEff convert bcftools ensemblVEP DeepVariant FastQC samtools bcftools annotate FreeBayes UMI Varlociraptor MultiQC HaplotypeCaller finalise FastP Sentieon Haplotyper normalise BBsplit Sentieon DNAscope consensus mapping Sentieon TNscope convert LoFreq markduplicates mosdepth, samtools MuSE prepare recalibration mpileup applybqsr Mutect2 mosdepth, samtools Strelka2 NGSCheckmate indexcov Manta TIDDIT ASCAT Control-FREEC CNVkit MSIsensor2 MSIsensor-pro SNPs & Indels SV & CNV MSI preprocessing__exit_right_0 (right) variantcalling__exit_right_1 (right) variantcalling__entry_left_2 (left) annotation__entry_left_3 (left) col 0|1 col 1|2 row 0|1 row 0 grid row 1 grid _vc_merge __converge_out_1 Core workflow Germline Tumor only Tumor-normal pair Mandatory Parabricks accelerated Sentieon accelerated Parabricks & Sentieon accelerated Expanded in pathways panel created with nf-metro v1.1.0+dev Adapted from: Fellows Yates, James A., et al. PeerJ 9 (2021)

Realistic Pipelines

Sarek Metro changed

Base (main)

1 Pre-processing 2 Variant calling 3 Annotation 4 Example analysis pathways uBAM spring FASTQ BAM/ CRAM CRAM CRAM CRAM VCF VCF CRAM VCF TXT ... variant calling snpEff convert bcftools ensemblVEP DeepVariant FastQC samtools bcftools annotate FreeBayes UMI Varlociraptor MultiQC HaplotypeCaller finalise FastP Sentieon Haplotyper normalise BBsplit Sentieon DNAscope consensus mapping Sentieon TNscope convert LoFreq markduplicates mosdepth, samtools MuSE prepare recalibration mpileup applybqsr Mutect2 mosdepth, samtools Strelka2 NGSCheckmate indexcov Manta TIDDIT ASCAT Control-FREEC CNVkit MSIsensor2 MSIsensor-pro SNPs & Indels SV & CNV MSI preprocessing__exit_right_0 (right) variantcalling__exit_right_1 (right) variantcalling__entry_left_2 (left) annotation__entry_left_3 (left) col 0|1 col 1|2 row 0|1 row 0 grid row 1 grid _vc_merge __converge_out_1 Core workflow Germline Tumor only Tumor-normal pair Mandatory Parabricks accelerated Sentieon accelerated Parabricks & Sentieon accelerated Expanded in pathways panel created with nf-metro v1.1.0+dev Adapted from: Fellows Yates, James A., et al. PeerJ 9 (2021)

PR

1 Pre-processing 2 Variant calling 3 Annotation 4 Example analysis pathways uBAM spring FASTQ BAM/ CRAM CRAM CRAM CRAM VCF VCF CRAM VCF TXT ... variant calling snpEff convert bcftools ensemblVEP DeepVariant FastQC samtools bcftools annotate FreeBayes UMI Varlociraptor MultiQC HaplotypeCaller finalise FastP Sentieon Haplotyper normalise BBsplit Sentieon DNAscope consensus mapping Sentieon TNscope convert LoFreq markduplicates mosdepth, samtools MuSE prepare recalibration mpileup applybqsr Mutect2 mosdepth, samtools Strelka2 NGSCheckmate indexcov Manta TIDDIT ASCAT Control-FREEC CNVkit MSIsensor2 MSIsensor-pro SNPs & Indels SV & CNV MSI preprocessing__exit_right_0 (right) variantcalling__exit_right_1 (right) variantcalling__entry_left_2 (left) annotation__entry_left_3 (left) col 0|1 col 1|2 row 0|1 row 0 grid row 1 grid _vc_merge __converge_out_1 Core workflow Germline Tumor only Tumor-normal pair Mandatory Parabricks accelerated Sentieon accelerated Parabricks & Sentieon accelerated Expanded in pathways panel created with nf-metro v1.1.0+dev Adapted from: Fellows Yates, James A., et al. PeerJ 9 (2021)